# Generated by roxygen2: do not edit by hand

export(PC_loadings)
export(add_diffcyt_statistics)
export(change_param_name)
export(checkInput)
export(check_IDs)
export(clr)
export(condor_info)
export(condor_session_info)
export(confusionMatrix)
export(corr_plot_comparison)
export(create_metaclustering_script)
export(df_frequency)
export(export_sce)
export(filter_fcd)
export(frequency_anova_test)
export(frequency_friedman_test)
export(frequency_kruskal_test)
export(frequency_t_test)
export(frequency_wilcox_test)
export(getTable)
export(harmonize_PCA)
export(harmonize_intensities)
export(learnUMAP)
export(marker_wilcox_test)
export(measured_markers)
export(merge_condor)
export(metaclustering)
export(order_param)
export(plot_confusion_HM)
export(plot_counts_barplot)
export(plot_dim_density)
export(plot_dim_red)
export(plot_frequency_barplot)
export(plot_frequency_boxplot)
export(plot_marker_HM)
export(plot_marker_boxplot)
export(plot_marker_density)
export(plot_marker_dotplot)
export(plot_marker_group_HM)
export(plot_marker_ridgeplot)
export(plot_marker_violinplot)
export(predict_classifier)
export(predict_labels)
export(prepInputDiffcyt)
export(prep_fcd)
export(prep_fjw)
export(read_data)
export(runAstir_cellstates)
export(runAstir_celltype)
export(runDM)
export(runFlowSOM)
export(runPCA)
export(runPCA_pseudobulk)
export(runPhenograph)
export(runPseudotime)
export(runUMAP)
export(run_cytonorm)
export(runtSNE)
export(scaleColors)
export(subsample_geosketch)
export(subset_fcd)
export(subset_fcd_byparam)
export(train_classifier_model)
export(train_cytonorm)
export(train_transfer_model)
export(transform_data)
export(used_markers)
export(write_fcs)
import(Biobase)
import(CytoDx)
import(CytoML)
import(CytoNorm)
import(DelayedMatrixStats)
import(FlowSOM)
import(Hmisc)
import(RColorBrewer)
import(Rmisc)
import(Rphenograph)
import(Rtsne)
import(SingleCellExperiment)
import(SummarizedExperiment)
import(caret)
import(corrplot)
import(cowplot)
import(destiny)
import(devtools)
import(diffcyt)
import(dplyr)
import(flowCore)
import(flowWorkspace)
import(ggplot2)
import(ggpubr)
import(ggrastr)
import(ggrepel)
import(ggridges)
import(ggsci)
import(harmony)
import(pheatmap)
import(randomForest)
import(readr)
import(readxl)
import(reshape2)
import(reticulate)
import(rstatix)
import(slingshot)
import(stats)
import(stringr)
import(tidyr)
import(umap)
import(uwot)
importFrom(Biobase,AnnotatedDataFrame)
importFrom(Matrix,sparseMatrix)
importFrom(S4Vectors,metadata)
importFrom(SingleCellExperiment,SingleCellExperiment)
importFrom(SingleCellExperiment,reducedDim)
importFrom(SummarizedExperiment,colData)
importFrom(grDevices,recordPlot)
importFrom(igraph,membership)
importFrom(utils,packageDescription)
importFrom(utils,sessionInfo)
importFrom(utils,write.csv)
