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000136111 041__ $$aEnglish
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000136111 1001_ $$0P:(DE-HGF)0$$aNaylor, Melissa G$$b0$$eCorresponding author
000136111 245__ $$aA Bayesian approach to genetic association studies with family-based designs.
000136111 260__ $$aNew York, NY$$bWiley-Liss$$c2010
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000136111 520__ $$aFor genome-wide association studies with family-based designs, we propose a Bayesian approach. We show that standard transmission disequilibrium test and family-based association test statistics can naturally be implemented in a Bayesian framework, allowing flexible specification of the likelihood and prior odds. We construct a Bayes factor conditional on the offspring phenotype and parental genotype data and then use the data we conditioned on to inform the prior odds for each marker. In the construction of the prior odds, the evidence for association for each single marker is obtained at the population-level by estimating its genetic effect size by fitting the conditional mean model. Since such genetic effect size estimates are statistically independent of the effect size estimation within the families, the actual data set can inform the construction of the prior odds without any statistical penalty. In contrast to Bayesian approaches that have recently been proposed for genome-wide association studies, our approach does not require assumptions about the genetic effect size; this makes the proposed method entirely data-driven. The power of the approach was assessed through simulation. We then applied the approach to a genome-wide association scan to search for associations between single nucleotide polymorphisms and body mass index in the Childhood Asthma Management Program data.
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000136111 650_2 $$2MeSH$$aAsthma: genetics
000136111 650_2 $$2MeSH$$aBayes Theorem
000136111 650_2 $$2MeSH$$aBody Mass Index
000136111 650_2 $$2MeSH$$aChild
000136111 650_2 $$2MeSH$$aGenome-Wide Association Study: methods
000136111 650_2 $$2MeSH$$aGenotype
000136111 650_2 $$2MeSH$$aHumans
000136111 650_2 $$2MeSH$$aLinkage Disequilibrium
000136111 650_2 $$2MeSH$$aModels, Genetic
000136111 650_2 $$2MeSH$$aModels, Statistical
000136111 650_2 $$2MeSH$$aPhenotype
000136111 650_2 $$2MeSH$$aPolymorphism, Single Nucleotide
000136111 7001_ $$0P:(DE-HGF)0$$aWeiss, Scott T$$b1
000136111 7001_ $$0P:(DE-2719)9000181$$aLange, Christoph$$b2$$eLast author
000136111 77318 $$2Crossref$$3journal-article$$a10.1002/gepi.20513$$b : Wiley, 2010-08-30$$n6$$p569-574$$tGenetic Epidemiology$$v34$$x0741-0395$$y2010
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000136111 8567_ $$2Pubmed Central$$uhttp://www.ncbi.nlm.nih.gov/pmc/articles/PMC3349938
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