Publications Database

Data for 10.5281/zenodo.17405746

Code repository for "Axon initial segment dynamics during associative fear learning"..

Spintge, Mai, Carraro et al., 2026: Single-cell multi-omic profiling allows the dissection of peripheral immune phenotypes in Alzheimer’s Disease progression The role of the peripheral immune system in Alzheimer’s Disease (AD) remains insufficiently resolved, limiting the understanding of systemic disease effects and mechanisms. Here, we employed three high-resolution single-cell techniques, including flow cytometry, single-cell RNA- and ATAC-sequencing, to investigate peripheral immunity in AD dementia and earlier stages of the AD trajectory in over 100 patients. [...]

This dataset comprises single-nucleus multi-omic (ATAC-seq + RNA-seq in the same nucleus) data from nuclei purified from the post-mortem human primary motor cortex (M1) from patients with ALS, ALS-FTD, C9ORF72-ALS-FTD and neurologically unaffected controls. Detailed methods and study description in the accompanying publication (tba)..

The Berkeley Advanced Reconstruction Toolbox (BART) is a free and open-source image-reconstruction framework for Computational Magnetic Resonance Imaging. The tools in this software implement various reconstruction algorithms for Magnetic Resonance Imaging. [...]

This dataset comprises single-nucleus transcriptomic (RNA-seq) data from nuclei purified from the post-mortem human primary motor cortex (M1) from patients with ALS-FTD, after sorting for TDP-43 nuclear signal (NeuN+, TDP-43 low vs. high). [...]

Amyloids, classically linked to neurodegenerative diseases, also play critical roles in infection and immunity. Phenol-soluble modulins (PSMs) from Staphylococcus aureus are virulent amyloids that contribute to cytotoxicity, immune modulation, and biofilm stability. [...]

This archive contains the source numerical data underlying all figures of the manuscript:Title: The mitochondrial unfolded protein response disrupts neuronal–glial communication and promotes senescence in human microgliaAuthors: Maria Jose Perez J., Alicia Lam, Christin Weissleder, Federico Bertoli, Hariam Raji, Mariella Bosch, Ivan Nemazanyy, Stefanie Kalb, Mohammed Kehili, Insa Hirschberg, Dario Brunetti, Indra Heckenbach, Morten Scheibye-Knudsen, and Michela DeleidiDate: October 2025Corresponding authors: Pérez M.J., Deleidi M., et al. (Imagine Institute, Paris)Each file corresponds to the exact dataset plotted in the figures..

This archive contains the source numerical data underlying all figures of the manuscript:Title: The mitochondrial unfolded protein response disrupts neuronal–glial communication and promotes senescence in human microgliaAuthors: Maria Jose Perez J., Alicia Lam, Christin Weissleder, Federico Bertoli, Hariam Raji, Mariella Bosch, Ivan Nemazanyy, Stefanie Kalb, Mohammed Kehili, Insa Hirschberg, Dario Brunetti, Indra Heckenbach, Morten Scheibye-Knudsen, and Michela DeleidiDate: October 2025Corresponding authors: Pérez M.J., Deleidi M., et al. (Imagine Institute, Paris)Each file corresponds to the exact dataset plotted in the figures..