000145065 001__ 145065
000145065 005__ 20240423115938.0
000145065 0247_ $$2ISSN$$a0301-5610
000145065 0247_ $$2doi$$a10.1093/nar/gkz869
000145065 0247_ $$2pmid$$apmid:31598718
000145065 0247_ $$2pmc$$apmc:PMC6943056
000145065 0247_ $$2ISSN$$a0305-1048
000145065 0247_ $$2ISSN$$a0309-1872
000145065 0247_ $$2ISSN$$a1362-4954
000145065 0247_ $$2ISSN$$a1362-4962
000145065 0247_ $$2altmetric$$aaltmetric:68158390
000145065 037__ $$aDZNE-2020-00424
000145065 041__ $$aEnglish
000145065 082__ $$a540
000145065 1001_ $$0P:(DE-HGF)0$$aRahman, Raza-Ur$$b0
000145065 245__ $$aSEAweb: the small RNA Expression Atlas web application.
000145065 260__ $$aLondon$$bInformation Retrieval Ltd.21517$$c2020
000145065 264_1 $$2Crossref$$3online$$bOxford University Press (OUP)$$c2019-10-10
000145065 264_1 $$2Crossref$$3print$$bOxford University Press (OUP)$$c2020-01-08
000145065 3367_ $$2DRIVER$$aarticle
000145065 3367_ $$2DataCite$$aOutput Types/Journal article
000145065 3367_ $$0PUB:(DE-HGF)16$$2PUB:(DE-HGF)$$aJournal Article$$bjournal$$mjournal$$s1713794434_6653
000145065 3367_ $$2BibTeX$$aARTICLE
000145065 3367_ $$2ORCID$$aJOURNAL_ARTICLE
000145065 3367_ $$00$$2EndNote$$aJournal Article
000145065 520__ $$aWe present the Small RNA Expression Atlas (SEAweb), a web application that allows for the interactive querying, visualization and analysis of known and novel small RNAs across 10 organisms. It contains sRNA and pathogen expression information for over 4200 published samples with standardized search terms and ontologies. In addition, SEAweb allows for the interactive visualization and re-analysis of 879 differential expression and 514 classification comparisons. SEAweb's user model enables sRNA researchers to compare and re-analyze user-specific and published datasets, highlighting common and distinct sRNA expression patterns. We provide evidence for SEAweb's fidelity by (i) generating a set of 591 tissue specific miRNAs across 29 tissues, (ii) finding known and novel bacterial and viral infections across diseases and (iii) determining a Parkinson's disease-specific blood biomarker signature using novel data. We believe that SEAweb's simple semantic search interface, the flexible interactive reports and the user model with rich analysis capabilities will enable researchers to better understand the potential function and diagnostic value of sRNAs or pathogens across tissues, diseases and organisms.
000145065 536__ $$0G:(DE-HGF)POF3-342$$a342 - Disease Mechanisms and Model Systems (POF3-342)$$cPOF3-342$$fPOF III$$x0
000145065 542__ $$2Crossref$$i2019-10-10$$uhttp://creativecommons.org/licenses/by/4.0/
000145065 588__ $$aDataset connected to CrossRef, PubMed,
000145065 650_7 $$2NLM Chemicals$$aRNA, Bacterial
000145065 650_7 $$2NLM Chemicals$$aRNA, Small Untranslated
000145065 650_7 $$2NLM Chemicals$$aRNA, Viral
000145065 650_2 $$2MeSH$$aAnimals
000145065 650_2 $$2MeSH$$aBacterial Infections: microbiology
000145065 650_2 $$2MeSH$$aCattle
000145065 650_2 $$2MeSH$$aDatabases, Nucleic Acid
000145065 650_2 $$2MeSH$$aHumans
000145065 650_2 $$2MeSH$$aInternet
000145065 650_2 $$2MeSH$$aMice
000145065 650_2 $$2MeSH$$aOrgan Specificity
000145065 650_2 $$2MeSH$$aParkinson Disease: blood
000145065 650_2 $$2MeSH$$aRNA, Bacterial: metabolism
000145065 650_2 $$2MeSH$$aRNA, Small Untranslated: metabolism
000145065 650_2 $$2MeSH$$aRNA, Viral: metabolism
000145065 650_2 $$2MeSH$$aRats
000145065 650_2 $$2MeSH$$aVirus Diseases: virology
000145065 7001_ $$0P:(DE-HGF)0$$aLiebhoff, Anna-Maria$$b1
000145065 7001_ $$0P:(DE-2719)2812055$$aBansal, Vikas$$b2$$udzne
000145065 7001_ $$0P:(DE-2719)2811935$$aFiosins, Maksims$$b3$$udzne
000145065 7001_ $$0P:(DE-HGF)0$$aRajput, Ashish$$b4
000145065 7001_ $$0P:(DE-HGF)0$$aSattar, Abdul$$b5
000145065 7001_ $$0P:(DE-HGF)0$$aMagruder, Daniel S$$b6
000145065 7001_ $$0P:(DE-HGF)0$$aMadan, Sumit$$b7
000145065 7001_ $$0P:(DE-HGF)0$$aSun, Ting$$b8
000145065 7001_ $$0P:(DE-HGF)0$$aGautam, Abhivyakti$$b9
000145065 7001_ $$0P:(DE-HGF)0$$aHeins, Sven$$b10
000145065 7001_ $$0P:(DE-HGF)0$$aLiwinski, Timur$$b11
000145065 7001_ $$0P:(DE-HGF)0$$aBethune, Jörn$$b12
000145065 7001_ $$0P:(DE-HGF)0$$aTrenkwalder, Claudia$$b13
000145065 7001_ $$0P:(DE-HGF)0$$aFluck, Juliane$$b14
000145065 7001_ $$0P:(DE-HGF)0$$aMollenhauer, Brit$$b15
000145065 7001_ $$0P:(DE-2719)2810547$$aBonn, Stefan$$b16$$eLast author$$udzne
000145065 77318 $$2Crossref$$3journal-article$$a10.1093/nar/gkz869$$bOxford University Press (OUP)$$d2019-10-10$$nD1$$pD204-D219$$tNucleic Acids Research$$v48$$x0305-1048$$y2019
000145065 773__ $$0PERI:(DE-600)1472175-2$$a10.1093/nar/gkz869$$gVol. 48, no. D1, p. D204 - D219$$nD1$$pD204-D219$$tNucleic acids research$$v48$$x0305-1048$$y2020
000145065 8564_ $$uhttps://pub.dzne.de/record/145065/files/DZNE-2020-00424.pdf$$yOpenAccess
000145065 8564_ $$uhttps://pub.dzne.de/record/145065/files/DZNE-2020-00424.pdf?subformat=pdfa$$xpdfa$$yOpenAccess
000145065 909CO $$ooai:pub.dzne.de:145065$$popenaire$$popen_access$$pVDB$$pdriver$$pdnbdelivery
000145065 9101_ $$0I:(DE-588)1065079516$$6P:(DE-2719)2812055$$aDeutsches Zentrum für Neurodegenerative Erkrankungen$$b2$$kDZNE
000145065 9101_ $$0I:(DE-588)1065079516$$6P:(DE-2719)2811935$$aDeutsches Zentrum für Neurodegenerative Erkrankungen$$b3$$kDZNE
000145065 9101_ $$0I:(DE-588)1065079516$$6P:(DE-2719)2810547$$aDeutsches Zentrum für Neurodegenerative Erkrankungen$$b16$$kDZNE
000145065 9131_ $$0G:(DE-HGF)POF3-342$$1G:(DE-HGF)POF3-340$$2G:(DE-HGF)POF3-300$$3G:(DE-HGF)POF3$$4G:(DE-HGF)POF$$aDE-HGF$$bGesundheit$$lErkrankungen des Nervensystems$$vDisease Mechanisms and Model Systems$$x0
000145065 9141_ $$y2020
000145065 915__ $$0StatID:(DE-HGF)0200$$2StatID$$aDBCoverage$$bSCOPUS$$d2022-11-18
000145065 915__ $$0StatID:(DE-HGF)0300$$2StatID$$aDBCoverage$$bMedline$$d2022-11-18
000145065 915__ $$0StatID:(DE-HGF)1050$$2StatID$$aDBCoverage$$bBIOSIS Previews$$d2022-11-18
000145065 915__ $$0StatID:(DE-HGF)1190$$2StatID$$aDBCoverage$$bBiological Abstracts$$d2020-06-12
000145065 915__ $$0LIC:(DE-HGF)CCBY4$$2HGFVOC$$aCreative Commons Attribution CC BY 4.0
000145065 915__ $$0StatID:(DE-HGF)9915$$2StatID$$aIF >= 15$$bNUCLEIC ACIDS RES : 2021$$d2022-11-18
000145065 915__ $$0StatID:(DE-HGF)0100$$2StatID$$aJCR$$bNUCLEIC ACIDS RES : 2021$$d2022-11-18
000145065 915__ $$0StatID:(DE-HGF)0501$$2StatID$$aDBCoverage$$bDOAJ Seal$$d2022-09-23T13:40:12Z
000145065 915__ $$0StatID:(DE-HGF)0500$$2StatID$$aDBCoverage$$bDOAJ$$d2022-09-23T13:40:12Z
000145065 915__ $$0StatID:(DE-HGF)1030$$2StatID$$aDBCoverage$$bCurrent Contents - Life Sciences$$d2022-11-18
000145065 915__ $$0StatID:(DE-HGF)0199$$2StatID$$aDBCoverage$$bClarivate Analytics Master Journal List$$d2022-11-18
000145065 915__ $$0StatID:(DE-HGF)0150$$2StatID$$aDBCoverage$$bWeb of Science Core Collection$$d2022-11-18
000145065 915__ $$0StatID:(DE-HGF)0510$$2StatID$$aOpenAccess
000145065 915__ $$0StatID:(DE-HGF)0030$$2StatID$$aPeer Review$$bDOAJ : Blind peer review$$d2022-09-23T13:40:12Z
000145065 915__ $$0StatID:(DE-HGF)0561$$2StatID$$aArticle Processing Charges$$f2020-06-12
000145065 915__ $$0StatID:(DE-HGF)0160$$2StatID$$aDBCoverage$$bEssential Science Indicators$$d2020-06-12
000145065 915__ $$0StatID:(DE-HGF)0420$$2StatID$$aNationallizenz$$d2022-11-18$$wger
000145065 915__ $$0StatID:(DE-HGF)0700$$2StatID$$aFees$$d2020-06-12
000145065 9201_ $$0I:(DE-2719)1410003$$kAG Bonn 1$$lComputational analysis of biological networks$$x0
000145065 980__ $$ajournal
000145065 980__ $$aVDB
000145065 980__ $$aUNRESTRICTED
000145065 980__ $$aI:(DE-2719)1410003
000145065 9801_ $$aFullTexts
000145065 999C5 $$1Witwer$$2Crossref$$9-- missing cx lookup --$$a10.1373/clinchem.2014.221341$$p56 -$$tClin. Chem.$$v61$$y2015
000145065 999C5 $$1Tycowski$$2Crossref$$9-- missing cx lookup --$$a10.1101/gad.259077.115$$p567 -$$tGenes Dev.$$v29$$y2015
000145065 999C5 $$1Bruscella$$2Crossref$$9-- missing cx lookup --$$a10.3389/fmicb.2017.00824$$p824 -$$tFront. Microbiol.$$v8$$y2017
000145065 999C5 $$1Ahmed$$2Crossref$$9-- missing cx lookup --$$a10.3389/fimmu.2016.00431$$p431 -$$tFront. Immunol.$$v7$$y2016
000145065 999C5 $$1Simon$$2Crossref$$9-- missing cx lookup --$$a10.1093/gigascience/giy070$$tGigascience$$v7$$y2018
000145065 999C5 $$1Leinonen$$2Crossref$$9-- missing cx lookup --$$a10.1093/nar/gkq1019$$pD19 -$$tNucleic Acids Res.$$v39$$y2011
000145065 999C5 $$1Barrett$$2Crossref$$9-- missing cx lookup --$$a10.1093/nar/gks1193$$pD991 -$$tNucleic Acids Res.$$v41$$y2013
000145065 999C5 $$1Panwar$$2Crossref$$oPanwar 2017$$y2017
000145065 999C5 $$1Vitsios$$2Crossref$$9-- missing cx lookup --$$a10.1093/nar/gkw1031$$p1079 -$$tNucleic Acids Res.$$v45$$y2017
000145065 999C5 $$1Chung$$2Crossref$$9-- missing cx lookup --$$a10.1093/nar/gkw1084$$pD925 -$$tNucleic Acids Res.$$v45$$y2017
000145065 999C5 $$1Kuksa$$2Crossref$$9-- missing cx lookup --$$a10.1093/nar/gky330$$pW36 -$$tNucleic Acids Res.$$v46$$y2018
000145065 999C5 $$1Sloan$$2Crossref$$9-- missing cx lookup --$$a10.1093/nar/gkv1160$$pD726 -$$tNucleic Acids Res.$$v44$$y2016
000145065 999C5 $$1Leung$$2Crossref$$9-- missing cx lookup --$$a10.1093/nar/gkv1188$$pD216 -$$tNucleic Acids Res.$$v44$$y2016
000145065 999C5 $$1Kuksa$$2Crossref$$9-- missing cx lookup --$$a10.1093/bioinformatics/bty709$$p1033 -$$tBioinformatics$$v35$$y2019
000145065 999C5 $$1Li$$2Crossref$$9-- missing cx lookup --$$a10.1093/nar/gkt1023$$pD1070 -$$tNucleic Acids Res.$$v42$$y2014
000145065 999C5 $$1Rahman$$2Crossref$$9-- missing cx lookup --$$a10.1186/s12859-018-2047-z$$p54 -$$tBMC Bioinformatics$$v19$$y2018
000145065 999C5 $$1Wong$$2Crossref$$9-- missing cx lookup --$$a10.1093/nar/gku1104$$pD146 -$$tNucleic Acids Res.$$v43$$y2015
000145065 999C5 $$1Hanisch$$2Crossref$$9-- missing cx lookup --$$a10.1186/1471-2105-6-S1-S14$$pS14 -$$tBMC Bioinformatics$$v6$$y2005
000145065 999C5 $$1Bagewadi$$2Crossref$$9-- missing cx lookup --$$a10.12688/f1000research.4591.3$$p205 -$$tF1000Research$$v3$$y2015
000145065 999C5 $$1Madan$$2Crossref$$9-- missing cx lookup --$$a10.1093/database/baw136$$pbaw136 -$$tDatabase.$$v2016$$y2016
000145065 999C5 $$1Love$$2Crossref$$9-- missing cx lookup --$$a10.1186/s13059-014-0550-8$$p550 -$$tGenome Biol.$$v15$$y2014
000145065 999C5 $$1Kozomara$$2Crossref$$9-- missing cx lookup --$$a10.1093/nar/gkt1181$$pD68 -$$tNucleic Acids Res.$$v42$$y2014
000145065 999C5 $$1Zerbino$$2Crossref$$9-- missing cx lookup --$$a10.1093/nar/gkx1098$$pD754 -$$tNucleic Acids Res.$$v46$$y2018
000145065 999C5 $$1Sai Lakshmi$$2Crossref$$9-- missing cx lookup --$$a10.1093/nar/gkm696$$pD173 -$$tNucleic Acids Res.$$v36$$y2008
000145065 999C5 $$1Chou$$2Crossref$$9-- missing cx lookup --$$a10.1093/nar/gkx1067$$pD296 -$$tNucleic Acids Res.$$v46$$y2018
000145065 999C5 $$1Federhen$$2Crossref$$9-- missing cx lookup --$$a10.1093/nar/gkr1178$$pD136 -$$tNucleic Acids Res.$$v40$$y2012
000145065 999C5 $$1Gremse$$2Crossref$$9-- missing cx lookup --$$a10.1093/nar/gkq968$$pD507 -$$tNucleic Acids Res.$$v39$$y2011
000145065 999C5 $$1Schriml$$2Crossref$$9-- missing cx lookup --$$a10.1093/nar/gky1032$$pD955 -$$tNucleic Acids Res.$$v47$$y2019
000145065 999C5 $$1Diehl$$2Crossref$$9-- missing cx lookup --$$a10.1186/s13326-016-0088-7$$p44 -$$tJ. Biomed. Semantics$$v7$$y2016
000145065 999C5 $$1Sarntivijai$$2Crossref$$9-- missing cx lookup --$$a10.1186/2041-1480-5-37$$p37 -$$tJ. Biomed. Semantics$$v5$$y2014
000145065 999C5 $$1Malone$$2Crossref$$9-- missing cx lookup --$$a10.1093/bioinformatics/btq099$$p1112 -$$tBioinformatics$$v26$$y2010
000145065 999C5 $$1Schuurman$$2Crossref$$9-- missing cx lookup --$$a10.4137/BBI.S451$$p187 -$$tBioinform. Biol. Insights$$v2$$y2008
000145065 999C5 $$1Côté$$2Crossref$$9-- missing cx lookup --$$a10.1093/nar/gkq331$$pW155 -$$tNucleic Acids Res.$$v38$$y2010
000145065 999C5 $$1Ludwig$$2Crossref$$9-- missing cx lookup --$$a10.1093/nar/gkw116$$p3865 -$$tNucleic Acids Res.$$v44$$y2016
000145065 999C5 $$1Lee$$2Crossref$$9-- missing cx lookup --$$a10.1261/rna.804508$$p35 -$$tRNA$$v14$$y2008
000145065 999C5 $$1Guo$$2Crossref$$9-- missing cx lookup --$$a10.1038/srep05150$$p5150 -$$tSci. Rep.$$v4$$y2014
000145065 999C5 $$1Ben-Shachar$$2Crossref$$9-- missing cx lookup --$$a10.1371/journal.pone.0159956$$pe0159956 -$$tPLoS One$$v11$$y2016
000145065 999C5 $$1Johnson$$2Crossref$$9-- missing cx lookup --$$a10.1007/s15010-015-0776-8$$p655 -$$tInfection$$v43$$y2015
000145065 999C5 $$1Ferreira$$2Crossref$$9-- missing cx lookup --$$a10.1038/ajg.2012.118$$p1268 -$$tAm. J. Gastroenterol.$$v107$$y2012
000145065 999C5 $$1McMullen$$2Crossref$$9-- missing cx lookup --$$a10.3934/microbiol.2015.1.82$$p82 -$$tAIMS Microbiol.$$v1$$y2015
000145065 999C5 $$1Dridi$$2Crossref$$9-- missing cx lookup --$$a10.1371/journal.pone.0007063$$pe7063 -$$tPLoS One$$v4$$y2009
000145065 999C5 $$1Bang$$2Crossref$$9-- missing cx lookup --$$a10.1371/journal.pone.0099411$$pe99411 -$$tPLoS One$$v9$$y2014
000145065 999C5 $$1Blais Lecours$$2Crossref$$9-- missing cx lookup --$$a10.1371/journal.pone.0087734$$pe87734 -$$tPLoS One$$v9$$y2014
000145065 999C5 $$1Pouget$$2Crossref$$9-- missing cx lookup --$$a10.1093/schbul/sby038$$p993 -$$tSchizophr. Bull.$$v44$$y2018
000145065 999C5 $$1Bernstein$$2Crossref$$9-- missing cx lookup --$$a10.1093/ibd/izy235$$p360 -$$tInflamm. Bowel Dis.$$v25$$y2019
000145065 999C5 $$1Hébert$$2Crossref$$9-- missing cx lookup --$$a10.3233/JAD-122350$$p335 -$$tJ. Alzheimers. Dis.$$v35$$y2013
000145065 999C5 $$1Severini$$2Crossref$$9-- missing cx lookup --$$a10.1007/s00705-013-1666-y$$p1825 -$$tArch. Virol.$$v158$$y2013
000145065 999C5 $$1Vann Jones$$2Crossref$$9-- missing cx lookup --$$a10.1017/S0033291713000494$$p673 -$$tPsychol. Med.$$v44$$y2014
000145065 999C5 $$1Surendranathan$$2Crossref$$9-- missing cx lookup --$$a10.1016/j.parkreldis.2015.10.009$$p1398 -$$tParkinsonism Relat. Disord.$$v21$$y2015
000145065 999C5 $$1Harris$$2Crossref$$9-- missing cx lookup --$$a10.3233/JAD-142853$$p319 -$$tJ. Alzheimers. Dis.$$v48$$y2015
000145065 999C5 $$1Sochocka$$2Crossref$$9-- missing cx lookup --$$a10.2174/1570159X15666170313122937$$p996 -$$tCurr. Neuropharmacol.$$v15$$y2017
000145065 999C5 $$1Yang$$2Crossref$$9-- missing cx lookup --$$a10.1007/s12031-016-0828-2$$p445 -$$tJ. Mol. Neurosci.$$v60$$y2016
000145065 999C5 $$1Margis$$2Crossref$$9-- missing cx lookup --$$a10.1016/j.jbiotec.2011.01.023$$p96 -$$tJ. Biotechnol.$$v152$$y2011
000145065 999C5 $$1Leggio$$2Crossref$$9-- missing cx lookup --$$a10.3390/ijms18122698$$pE2698 -$$tInt. J. Mol. Sci.$$v18$$y2017
000145065 999C5 $$1Heman-Ackah$$2Crossref$$9-- missing cx lookup --$$a10.3389/fnmol.2013.00040$$p40 -$$tFront. Mol. Neurosci.$$v6$$y2013
000145065 999C5 $$1Wang$$2Crossref$$9-- missing cx lookup --$$a10.1093/nar/gkx356$$pW130 -$$tNucleic Acids Res.$$v45$$y2017
000145065 999C5 $$1Pissadaki$$2Crossref$$9-- missing cx lookup --$$a10.3389/fncom.2013.00013$$p13 -$$tFront. Comput. Neurosci.$$v7$$y2013
000145065 999C5 $$1Bolam$$2Crossref$$9-- missing cx lookup --$$a10.1002/mds.25135$$p1478 -$$tMov. Disord.$$v27$$y2012
000145065 999C5 $$1Surmeier$$2Crossref$$9-- missing cx lookup --$$a10.1038/nrn.2016.178$$p101 -$$tNat. Rev. Neurosci.$$v18$$y2017
000145065 999C5 $$1Saba$$2Crossref$$9-- missing cx lookup --$$a10.1371/journal.pone.0003652$$pe3652 -$$tPLoS One$$v3$$y2008
000145065 999C5 $$1Montag$$2Crossref$$9-- missing cx lookup --$$a10.1186/1750-1326-4-36$$p36 -$$tMol. Neurodegener.$$v4$$y2009
000145065 999C5 $$1Alves da Costa$$2Crossref$$9-- missing cx lookup --$$a10.1016/j.cellsig.2010.10.020$$p963 -$$tCell. Signal.$$v23$$y2011
000145065 999C5 $$1Ogino$$2Crossref$$9-- missing cx lookup --$$a10.3390/ijms17060954$$pE954 -$$tInt. J. Mol. Sci.$$v17$$y2016
000145065 999C5 $$1Hegarty$$2Crossref$$9-- missing cx lookup --$$a10.1042/NS20170181$$pNS20170181 -$$tNeuronal. Signal.$$v2$$y2018
000145065 999C5 $$1Södersten$$2Crossref$$9-- missing cx lookup --$$a10.1371/journal.pgen.1004574$$pe1004574 -$$tPLoS Genet.$$v10$$y2014
000145065 999C5 $$1van der Heide$$2Crossref$$9-- missing cx lookup --$$a10.1016/j.molmed.2013.02.003$$p211 -$$tTrends Mol. Med.$$v19$$y2013
000145065 999C5 $$1Zhang$$2Crossref$$9-- missing cx lookup --$$a10.1093/nar/gki475$$pW741 -$$tNucleic Acids Res.$$v33$$y2005
000145065 999C5 $$1Fiosina$$2Crossref$$9-- missing cx lookup --$$a10.1007/978-3-030-20242-2_14$$p159 -$$y2019