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@ARTICLE{Chen:258782,
author = {Chen, Shu-Yu and Feilen, Lukas Peter and
Chávez-Gutiérrez, Lucía and Steiner, Harald and
Zacharias, Martin},
title = {{E}nzyme-substrate hybrid β-sheet controls geometry and
water access to the γ-secretase active site.},
journal = {Communications biology},
volume = {6},
number = {1},
issn = {2399-3642},
address = {London},
publisher = {Springer Nature},
reportid = {DZNE-2023-00676},
pages = {670},
year = {2023},
abstract = {γ-Secretase is an aspartyl intramembrane protease that
cleaves the amyloid precursor protein (APP) involved in
Alzheimer's disease pathology and other transmembrane
proteins. Substrate-bound structures reveal a stable hybrid
β-sheet immediately following the substrate scissile bond
consisting of β1 and β2 from the enzyme and β3 from the
substrate. Molecular dynamics simulations and enhanced
sampling simulations demonstrate that the hybrid β-sheet
stability is strongly correlated with the formation of a
stable cleavage-compatible active geometry and it also
controls water access to the active site. The hybrid
β-sheet is only stable for substrates with 3 or more
C-terminal residues beyond the scissile bond. The simulation
model allowed us to predict the effect of Pro and Phe
mutations that weaken the formation of the hybrid β-sheet
which were confirmed by experimental testing. Our study
provides a direct explanation why γ-secretase
preferentially cleaves APP in steps of 3 residues and how
the hybrid β-sheet facilitates γ-secretase proteolysis.},
keywords = {Amyloid Precursor Protein Secretases: genetics / Amyloid
Precursor Protein Secretases: metabolism / Catalytic Domain
/ Protein Conformation, beta-Strand / Amyloid beta-Protein
Precursor: genetics / Amyloid beta-Protein Precursor:
metabolism / Water Supply / Amyloid Precursor Protein
Secretases (NLM Chemicals) / Amyloid beta-Protein Precursor
(NLM Chemicals)},
cin = {AG Steiner},
ddc = {570},
cid = {I:(DE-2719)1110000-1},
pnm = {352 - Disease Mechanisms (POF4-352)},
pid = {G:(DE-HGF)POF4-352},
typ = {PUB:(DE-HGF)16},
pmc = {pmc:PMC10290658},
pubmed = {pmid:37355752},
doi = {10.1038/s42003-023-05039-y},
url = {https://pub.dzne.de/record/258782},
}