000268473 001__ 268473
000268473 005__ 20240610153633.0
000268473 0247_ $$2doi$$a10.5281/ZENODO.10626258
000268473 037__ $$aDZNE-2024-00225
000268473 041__ $$aEnglish
000268473 1001_ $$0P:(DE-2719)2812628$$aAmin, Hayder$$b0$$udzne
000268473 245__ $$aDataset: Spatial Transcriptomics Mouse Hippocampal Slices for MEA-seqX Platform
000268473 260__ $$bZenodo$$c2024
000268473 3367_ $$2BibTeX$$aMISC
000268473 3367_ $$0PUB:(DE-HGF)32$$2PUB:(DE-HGF)$$aDataset$$bdataset$$mdataset$$s1718026570_5322
000268473 3367_ $$026$$2EndNote$$aChart or Table
000268473 3367_ $$2DataCite$$aDataset
000268473 3367_ $$2ORCID$$aDATA_SET
000268473 3367_ $$2DINI$$aResearchData
000268473 520__ $$aSequencing data (fastq.gz) was processed using the 10X Genomics Space Ranger Count pipeline. L75027 = Mouse_Hippocampus_SD L75031 = Mouse_Hippocampus_ENR Outputs include a spatial folder containing outputs that capture the spatiality of the data and a filtered_feature_bc matrix folder containing the tissue-associated barcodes in MEX format. spatial/ aligned_fiducials.jpg: Aligned fiducials QC image detected_tissue_image.jpg: Detected tissue QC image scalefactors_json.json: Scale conversion factors for spot diameter and coordinates at various image resolutions tissue_hires_image.png: Downsampled full resolution image tissue_lowres_image.png: Full resolution image downsampled to 600 pixels on the longest dimension tissue_positions_list.csv: CSV containing spot barcode filtered_feature_bc_matrix.h5: Contains only tissue-associated barcodes in in HDF5 format filtered_feature_bc_matrix/ barcodes.tsv.gz: List of barcodes features.tsv.gz: List of features matrix.mtx.gz: Count matrix
000268473 536__ $$0G:(DE-HGF)POF4-351$$a351 - Brain Function (POF4-351)$$cPOF4-351$$fPOF IV$$x0
000268473 536__ $$0G:(DE-HGF)POF4-352$$a352 - Disease Mechanisms (POF4-352)$$cPOF4-352$$fPOF IV$$x1
000268473 588__ $$aDataset connected to DataCite
000268473 650_7 $$2Other$$aSpatial transcriptomics
000268473 650_7 $$2Other$$aLarge-scale HD-MEA recordings
000268473 650_7 $$2Other$$aConnectome
000268473 650_7 $$2Other$$aExperience-dependent plasticity
000268473 650_7 $$2Other$$aNeuroinformatics
000268473 650_7 $$2Other$$aAI/ML
000268473 650_7 $$2Other$$aSpatiotemporal dynamics
000268473 650_7 $$2Other$$aPredictive modeling
000268473 7001_ $$0P:(DE-2719)9001361$$aEmery, Brett$$b1$$udzne
000268473 7001_ $$0P:(DE-2719)9001867$$aKhanzada, Shahrukh$$b2$$udzne
000268473 7001_ $$0P:(DE-2719)2814182$$aHu, Xin$$b3$$udzne
000268473 7001_ $$0P:(DE-2719)2814292$$aKlütsch, Diana$$b4$$eProject Member$$udzne
000268473 7001_ $$aLarsson, Ludvig$$b5$$eProject Member
000268473 7001_ $$aDumitru, Ionut$$b6$$eProject Member
000268473 7001_ $$aFrisén, Jonas$$b7$$eProject Member
000268473 7001_ $$aLundeberg, Joakim$$b8$$eProject Member
000268473 7001_ $$0P:(DE-2719)2000011$$aKempermann, Gerd$$b9$$eProject Member$$udzne
000268473 773__ $$a10.5281/ZENODO.10626258
000268473 8564_ $$uhttps://zenodo.org/records/10626259
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000268473 9101_ $$0I:(DE-588)1065079516$$6P:(DE-2719)2812628$$aDeutsches Zentrum für Neurodegenerative Erkrankungen$$b0$$kDZNE
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000268473 9101_ $$0I:(DE-588)1065079516$$6P:(DE-2719)2814292$$aDeutsches Zentrum für Neurodegenerative Erkrankungen$$b4$$kDZNE
000268473 9101_ $$0I:(DE-588)1065079516$$6P:(DE-2719)2000011$$aDeutsches Zentrum für Neurodegenerative Erkrankungen$$b9$$kDZNE
000268473 9131_ $$0G:(DE-HGF)POF4-351$$1G:(DE-HGF)POF4-350$$2G:(DE-HGF)POF4-300$$3G:(DE-HGF)POF4$$4G:(DE-HGF)POF$$aDE-HGF$$bGesundheit$$lNeurodegenerative Diseases$$vBrain Function$$x0
000268473 9131_ $$0G:(DE-HGF)POF4-352$$1G:(DE-HGF)POF4-350$$2G:(DE-HGF)POF4-300$$3G:(DE-HGF)POF4$$4G:(DE-HGF)POF$$aDE-HGF$$bGesundheit$$lNeurodegenerative Diseases$$vDisease Mechanisms$$x1
000268473 9141_ $$y2024
000268473 9201_ $$0I:(DE-2719)1710010$$kAG Amin$$lBiohybrid Neuroelectronics (BIONICS)$$x0
000268473 9201_ $$0I:(DE-2719)1710001$$kAG Kempermann$$lAdult Neurogenesis$$x1
000268473 980__ $$adataset
000268473 980__ $$aVDB
000268473 980__ $$aI:(DE-2719)1710010
000268473 980__ $$aI:(DE-2719)1710001
000268473 980__ $$aUNRESTRICTED