TY  - CHART
AU  - Amin, Hayder
AU  - Emery, Brett
AU  - Khanzada, Shahrukh
AU  - Hu, Xin
TI  - Dataset: Spatial Transcriptomics Mouse Hippocampal Slices for MEA-seqX Platform
PB  - Zenodo
M1  - DZNE-2024-00225
PY  - 2024
AB  - Sequencing data (fastq.gz) was processed using the 10X Genomics Space Ranger Count pipeline. L75027 = Mouse_Hippocampus_SD L75031 = Mouse_Hippocampus_ENR Outputs include a spatial folder containing outputs that capture the spatiality of the data and a filtered_feature_bc matrix folder containing the tissue-associated barcodes in MEX format. spatial/ aligned_fiducials.jpg: Aligned fiducials QC image detected_tissue_image.jpg: Detected tissue QC image scalefactors_json.json: Scale conversion factors for spot diameter and coordinates at various image resolutions tissue_hires_image.png: Downsampled full resolution image tissue_lowres_image.png: Full resolution image downsampled to 600 pixels on the longest dimension tissue_positions_list.csv: CSV containing spot barcode filtered_feature_bc_matrix.h5: Contains only tissue-associated barcodes in in HDF5 format filtered_feature_bc_matrix/ barcodes.tsv.gz: List of barcodes features.tsv.gz: List of features matrix.mtx.gz: Count matrix
KW  - Spatial transcriptomics (Other)
KW  - Large-scale HD-MEA recordings (Other)
KW  - Connectome (Other)
KW  - Experience-dependent plasticity (Other)
KW  - Neuroinformatics (Other)
KW  - AI/ML (Other)
KW  - Spatiotemporal dynamics (Other)
KW  - Predictive modeling (Other)
LB  - PUB:(DE-HGF)32
DO  - DOI:10.5281/ZENODO.10626258
UR  - https://pub.dzne.de/record/268473
ER  -