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@MISC{Amin:268473,
      author       = {Amin, Hayder and Emery, Brett and Khanzada, Shahrukh and
                      Hu, Xin},
      othercontributors = {Klütsch, Diana and Larsson, Ludvig and Dumitru, Ionut and
                          Frisén, Jonas and Lundeberg, Joakim and Kempermann, Gerd},
      title        = {{D}ataset: {S}patial {T}ranscriptomics {M}ouse
                      {H}ippocampal {S}lices for {MEA}-seq{X} {P}latform},
      publisher    = {Zenodo},
      reportid     = {DZNE-2024-00225},
      year         = {2024},
      abstract     = {Sequencing data (fastq.gz) was processed using the 10X
                      Genomics Space Ranger Count pipeline. L75027 =
                      $Mouse_Hippocampus_SD$ L75031 = $Mouse_Hippocampus_ENR$
                      Outputs include a spatial folder containing outputs that
                      capture the spatiality of the data and a
                      $filtered_feature_bc$ matrix folder containing the
                      tissue-associated barcodes in MEX format. spatial/
                      $aligned_fiducials.jpg:$ Aligned fiducials QC image
                      $detected_tissue_image.jpg:$ Detected tissue QC image
                      $scalefactors_json.json:$ Scale conversion factors for spot
                      diameter and coordinates at various image resolutions
                      $tissue_hires_image.png:$ Downsampled full resolution image
                      $tissue_lowres_image.png:$ Full resolution image downsampled
                      to 600 pixels on the longest dimension
                      $tissue_positions_list.csv:$ CSV containing spot barcode
                      $filtered_feature_bc_matrix.h5:$ Contains only
                      tissue-associated barcodes in in HDF5 format
                      $filtered_feature_bc_matrix/$ barcodes.tsv.gz: List of
                      barcodes features.tsv.gz: List of features matrix.mtx.gz:
                      Count matrix},
      keywords     = {Spatial transcriptomics (Other) / Large-scale HD-MEA
                      recordings (Other) / Connectome (Other) /
                      Experience-dependent plasticity (Other) / Neuroinformatics
                      (Other) / AI/ML (Other) / Spatiotemporal dynamics (Other) /
                      Predictive modeling (Other)},
      cin          = {AG Amin / AG Kempermann},
      cid          = {I:(DE-2719)1710010 / I:(DE-2719)1710001},
      pnm          = {351 - Brain Function (POF4-351) / 352 - Disease Mechanisms
                      (POF4-352)},
      pid          = {G:(DE-HGF)POF4-351 / G:(DE-HGF)POF4-352},
      typ          = {PUB:(DE-HGF)32},
      doi          = {10.5281/ZENODO.10626258},
      url          = {https://pub.dzne.de/record/268473},
}