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| Home > Publications Database > Dataset: Spatial Transcriptomics Mouse Hippocampal Slices for MEA-seqX Platform > print |
| 001 | 268473 | ||
| 005 | 20240610153633.0 | ||
| 024 | 7 | _ | |a 10.5281/ZENODO.10626258 |2 doi |
| 037 | _ | _ | |a DZNE-2024-00225 |
| 041 | _ | _ | |a English |
| 100 | 1 | _ | |a Amin, Hayder |0 P:(DE-2719)2812628 |b 0 |u dzne |
| 245 | _ | _ | |a Dataset: Spatial Transcriptomics Mouse Hippocampal Slices for MEA-seqX Platform |
| 260 | _ | _ | |c 2024 |b Zenodo |
| 336 | 7 | _ | |a MISC |2 BibTeX |
| 336 | 7 | _ | |a Dataset |b dataset |m dataset |0 PUB:(DE-HGF)32 |s 1718026570_5322 |2 PUB:(DE-HGF) |
| 336 | 7 | _ | |a Chart or Table |0 26 |2 EndNote |
| 336 | 7 | _ | |a Dataset |2 DataCite |
| 336 | 7 | _ | |a DATA_SET |2 ORCID |
| 336 | 7 | _ | |a ResearchData |2 DINI |
| 520 | _ | _ | |a Sequencing data (fastq.gz) was processed using the 10X Genomics Space Ranger Count pipeline. L75027 = Mouse_Hippocampus_SD L75031 = Mouse_Hippocampus_ENR Outputs include a spatial folder containing outputs that capture the spatiality of the data and a filtered_feature_bc matrix folder containing the tissue-associated barcodes in MEX format. spatial/ aligned_fiducials.jpg: Aligned fiducials QC image detected_tissue_image.jpg: Detected tissue QC image scalefactors_json.json: Scale conversion factors for spot diameter and coordinates at various image resolutions tissue_hires_image.png: Downsampled full resolution image tissue_lowres_image.png: Full resolution image downsampled to 600 pixels on the longest dimension tissue_positions_list.csv: CSV containing spot barcode filtered_feature_bc_matrix.h5: Contains only tissue-associated barcodes in in HDF5 format filtered_feature_bc_matrix/ barcodes.tsv.gz: List of barcodes features.tsv.gz: List of features matrix.mtx.gz: Count matrix |
| 536 | _ | _ | |a 351 - Brain Function (POF4-351) |0 G:(DE-HGF)POF4-351 |c POF4-351 |f POF IV |x 0 |
| 536 | _ | _ | |a 352 - Disease Mechanisms (POF4-352) |0 G:(DE-HGF)POF4-352 |c POF4-352 |f POF IV |x 1 |
| 588 | _ | _ | |a Dataset connected to DataCite |
| 650 | _ | 7 | |a Spatial transcriptomics |2 Other |
| 650 | _ | 7 | |a Large-scale HD-MEA recordings |2 Other |
| 650 | _ | 7 | |a Connectome |2 Other |
| 650 | _ | 7 | |a Experience-dependent plasticity |2 Other |
| 650 | _ | 7 | |a Neuroinformatics |2 Other |
| 650 | _ | 7 | |a AI/ML |2 Other |
| 650 | _ | 7 | |a Spatiotemporal dynamics |2 Other |
| 650 | _ | 7 | |a Predictive modeling |2 Other |
| 700 | 1 | _ | |a Emery, Brett |0 P:(DE-2719)9001361 |b 1 |u dzne |
| 700 | 1 | _ | |a Khanzada, Shahrukh |0 P:(DE-2719)9001867 |b 2 |u dzne |
| 700 | 1 | _ | |a Hu, Xin |0 P:(DE-2719)2814182 |b 3 |u dzne |
| 700 | 1 | _ | |a Klütsch, Diana |0 P:(DE-2719)2814292 |b 4 |e Project Member |u dzne |
| 700 | 1 | _ | |a Larsson, Ludvig |b 5 |e Project Member |
| 700 | 1 | _ | |a Dumitru, Ionut |b 6 |e Project Member |
| 700 | 1 | _ | |a Frisén, Jonas |b 7 |e Project Member |
| 700 | 1 | _ | |a Lundeberg, Joakim |b 8 |e Project Member |
| 700 | 1 | _ | |a Kempermann, Gerd |0 P:(DE-2719)2000011 |b 9 |e Project Member |u dzne |
| 773 | _ | _ | |a 10.5281/ZENODO.10626258 |
| 856 | 4 | _ | |u https://zenodo.org/records/10626259 |
| 909 | C | O | |p VDB |o oai:pub.dzne.de:268473 |
| 910 | 1 | _ | |a Deutsches Zentrum für Neurodegenerative Erkrankungen |0 I:(DE-588)1065079516 |k DZNE |b 0 |6 P:(DE-2719)2812628 |
| 910 | 1 | _ | |a Deutsches Zentrum für Neurodegenerative Erkrankungen |0 I:(DE-588)1065079516 |k DZNE |b 1 |6 P:(DE-2719)9001361 |
| 910 | 1 | _ | |a Deutsches Zentrum für Neurodegenerative Erkrankungen |0 I:(DE-588)1065079516 |k DZNE |b 2 |6 P:(DE-2719)9001867 |
| 910 | 1 | _ | |a Deutsches Zentrum für Neurodegenerative Erkrankungen |0 I:(DE-588)1065079516 |k DZNE |b 3 |6 P:(DE-2719)2814182 |
| 910 | 1 | _ | |a Deutsches Zentrum für Neurodegenerative Erkrankungen |0 I:(DE-588)1065079516 |k DZNE |b 4 |6 P:(DE-2719)2814292 |
| 910 | 1 | _ | |a Deutsches Zentrum für Neurodegenerative Erkrankungen |0 I:(DE-588)1065079516 |k DZNE |b 9 |6 P:(DE-2719)2000011 |
| 913 | 1 | _ | |a DE-HGF |b Gesundheit |l Neurodegenerative Diseases |1 G:(DE-HGF)POF4-350 |0 G:(DE-HGF)POF4-351 |3 G:(DE-HGF)POF4 |2 G:(DE-HGF)POF4-300 |4 G:(DE-HGF)POF |v Brain Function |x 0 |
| 913 | 1 | _ | |a DE-HGF |b Gesundheit |l Neurodegenerative Diseases |1 G:(DE-HGF)POF4-350 |0 G:(DE-HGF)POF4-352 |3 G:(DE-HGF)POF4 |2 G:(DE-HGF)POF4-300 |4 G:(DE-HGF)POF |v Disease Mechanisms |x 1 |
| 914 | 1 | _ | |y 2024 |
| 920 | 1 | _ | |0 I:(DE-2719)1710010 |k AG Amin |l Biohybrid Neuroelectronics (BIONICS) |x 0 |
| 920 | 1 | _ | |0 I:(DE-2719)1710001 |k AG Kempermann |l Adult Neurogenesis |x 1 |
| 980 | _ | _ | |a dataset |
| 980 | _ | _ | |a VDB |
| 980 | _ | _ | |a I:(DE-2719)1710010 |
| 980 | _ | _ | |a I:(DE-2719)1710001 |
| 980 | _ | _ | |a UNRESTRICTED |
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