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@MISC{Bonaguro:280036,
      author       = {Bonaguro, Lorenzo and Kroeger, Charlotte and Müller,
                      Sophie},
      title        = {{S}oftware: cy{CONDOR}, v0.3.0},
      address      = {Zenodo},
      reportid     = {DZNE-2025-00880},
      year         = {2025},
      abstract     = {cyCONDOR 0.3.0 changelog Bug fix with data projection where
                      specific parameters were removed in UMAP calculation Updated
                      official Docker image to the latest Bioconductor version
                      (Bioconductor 3.20, R 4.4.2) Completed documentation of the
                      Astir workflow. Added parameter to select number of PCs and
                      markers for UMAP projection in learnUMAP function. Added
                      documentation and guide to install cyCONDOR in Silicon Mac.
                      We now how a compiled version of the Rphenoannoy package.
                      Simplified installation process, now automatically
                      installing also the GitHub dependencies. Enable Geometric
                      Sketching to subset a condor object with the function
                      $geometric_sketching$ Developed a function
                      $(condor_session_info)$ to include the SessionInfo to the
                      condor object to increase tackability of the analysis.
                      Included storage of the statistical test results in the
                      condor object Added the option to display statistics to the
                      $plot_frequency_boxplot$ function - so far for wilcox,
                      $t_test$ and diffcyt Added function to correlate the
                      cyCONDOR results and the manual gating with FlowJo or
                      similar software $(corr_plot_comparison)$ Experimental:
                      Added a function to write FCS files from a condor object
                      $(write_fcs).$ Currently the function if writing in the .fcs
                      file the cyCONDOR transformed values, we will change to the
                      original values in the next iteration after more extensive
                      testing.},
      cin          = {AG Bonaguro / AG Aschenbrenner},
      cid          = {I:(DE-2719)1016005 / I:(DE-2719)5000082},
      pnm          = {354 - Disease Prevention and Healthy Aging (POF4-354)},
      pid          = {G:(DE-HGF)POF4-354},
      typ          = {PUB:(DE-HGF)33},
      doi          = {10.5281/ZENODO.15962306},
      url          = {https://pub.dzne.de/record/280036},
}