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| Home > Publications Database > Software: cyCONDOR, v0.3.0 > print |
| 001 | 280036 | ||
| 005 | 20251212143201.0 | ||
| 024 | 7 | _ | |2 doi |a 10.5281/ZENODO.15962306 |
| 037 | _ | _ | |a DZNE-2025-00880 |
| 100 | 1 | _ | |0 P:(DE-2719)9001512 |a Bonaguro, Lorenzo |b 0 |u dzne |
| 245 | _ | _ | |a Software: cyCONDOR, v0.3.0 |
| 260 | _ | _ | |a Zenodo |c 2025 |
| 336 | 7 | _ | |2 DCMI |a Software |
| 336 | 7 | _ | |0 PUB:(DE-HGF)33 |2 PUB:(DE-HGF) |a Software |b sware |m sware |s 1753103418_28973 |
| 336 | 7 | _ | |2 BibTeX |a MISC |
| 336 | 7 | _ | |0 6 |2 EndNote |a Computer Program |
| 336 | 7 | _ | |2 ORCID |a OTHER |
| 336 | 7 | _ | |2 DataCite |a Software |
| 520 | _ | _ | |a cyCONDOR 0.3.0 changelog Bug fix with data projection where specific parameters were removed in UMAP calculation Updated official Docker image to the latest Bioconductor version (Bioconductor 3.20, R 4.4.2) Completed documentation of the Astir workflow. Added parameter to select number of PCs and markers for UMAP projection in learnUMAP function. Added documentation and guide to install cyCONDOR in Silicon Mac. We now how a compiled version of the Rphenoannoy package. Simplified installation process, now automatically installing also the GitHub dependencies. Enable Geometric Sketching to subset a condor object with the function geometric_sketching Developed a function (condor_session_info) to include the SessionInfo to the condor object to increase tackability of the analysis. Included storage of the statistical test results in the condor object Added the option to display statistics to the plot_frequency_boxplot function - so far for wilcox, t_test and diffcyt Added function to correlate the cyCONDOR results and the manual gating with FlowJo or similar software (corr_plot_comparison) Experimental: Added a function to write FCS files from a condor object (write_fcs). Currently the function if writing in the .fcs file the cyCONDOR transformed values, we will change to the original values in the next iteration after more extensive testing. |
| 536 | _ | _ | |0 G:(DE-HGF)POF4-354 |a 354 - Disease Prevention and Healthy Aging (POF4-354) |c POF4-354 |f POF IV |x 0 |
| 588 | _ | _ | |a Dataset connected to DataCite |
| 700 | 1 | _ | |0 P:(DE-2719)9000629 |a Kroeger, Charlotte |b 1 |u dzne |
| 700 | 1 | _ | |0 P:(DE-2719)9001774 |a Müller, Sophie |b 2 |u dzne |
| 773 | _ | _ | |a 10.5281/ZENODO.15962306 |
| 909 | C | O | |o oai:pub.dzne.de:280036 |p VDB |
| 910 | 1 | _ | |0 I:(DE-588)1065079516 |6 P:(DE-2719)9001512 |a Deutsches Zentrum für Neurodegenerative Erkrankungen |b 0 |k DZNE |
| 910 | 1 | _ | |0 I:(DE-588)1065079516 |6 P:(DE-2719)9000629 |a Deutsches Zentrum für Neurodegenerative Erkrankungen |b 1 |k DZNE |
| 910 | 1 | _ | |0 I:(DE-588)1065079516 |6 P:(DE-2719)9001774 |a Deutsches Zentrum für Neurodegenerative Erkrankungen |b 2 |k DZNE |
| 913 | 1 | _ | |0 G:(DE-HGF)POF4-354 |1 G:(DE-HGF)POF4-350 |2 G:(DE-HGF)POF4-300 |3 G:(DE-HGF)POF4 |4 G:(DE-HGF)POF |a DE-HGF |b Gesundheit |l Neurodegenerative Diseases |v Disease Prevention and Healthy Aging |x 0 |
| 914 | 1 | _ | |y 2025 |
| 920 | 1 | _ | |0 I:(DE-2719)1016005 |k AG Bonaguro |l Molecular and Translational Immunaging |x 0 |
| 920 | 1 | _ | |0 I:(DE-2719)5000082 |k AG Aschenbrenner |l Aging and Immunity |x 1 |
| 980 | _ | _ | |a sware |
| 980 | _ | _ | |a VDB |
| 980 | _ | _ | |a I:(DE-2719)1016005 |
| 980 | _ | _ | |a I:(DE-2719)5000082 |
| 980 | _ | _ | |a UNRESTRICTED |
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