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@INBOOK{Hartmann:285026,
author = {Hartmann, Celia L and Schultze, Joachim L and Beyer, Marc D
and Carraro, Caterina},
title = {{L}aser-{C}apture {M}icrodissection {F}ollowed by
{ATAC}-{S}eq.},
volume = {3015},
address = {New York, NY},
publisher = {Springer US},
reportid = {DZNE-2026-00151},
isbn = {978-1-0716-5153-7 (print)},
series = {Methods in Molecular Biology},
pages = {151 - 162},
year = {2026},
comment = {Laser Capture Microdissection / Noberini, Roberta (Editor)
; New York, NY : Springer US, 2026, Chapter 12 ; ISSN:
1064-3745=1940-6029 ; ISBN:
978-1-0716-5153-7=978-1-0716-5154-4 ;
doi:10.1007/978-1-0716-5154-4},
booktitle = {Laser Capture Microdissection /
Noberini, Roberta (Editor) ; New York,
NY : Springer US, 2026, Chapter 12 ;
ISSN: 1064-3745=1940-6029 ; ISBN:
978-1-0716-5153-7=978-1-0716-5154-4 ;
doi:10.1007/978-1-0716-5154-4},
abstract = {Laser-capture microdissection (LCM) enables the collection
of regions of interest from target tissues, making it
compatible with a number of spatially resolved downstream
omics applications. Here, we provide a detailed protocol for
LCM coupled to ATAC-seq (LCM-ATAC-seq) for the spatial
analysis of chromatin landscape based on the method
published by Carraro et al. (Cell Rep Methods 3:100598,
2023). LCM-ATAC-seq allows the efficient capture down to
single nuclei and can be combined with the morphological
staining of target cell populations to characterize
chromatin states in fresh-frozen tissue samples.},
keywords = {Laser Capture Microdissection: methods / Chromatin:
genetics / Chromatin Immunoprecipitation Sequencing: methods
/ Humans / High-Throughput Nucleotide Sequencing: methods /
ATAC-seq (Other) / Chromatin accessibility (Other) /
Laser-capture microdissection (Other) / Morphological
staining (Other) / Spatial omics (Other) / Chromatin (NLM
Chemicals)},
cin = {AG Schultze / AG Beyer / PRECISE},
ddc = {570},
cid = {I:(DE-2719)1013038 / I:(DE-2719)1013035 /
I:(DE-2719)1013031},
pnm = {354 - Disease Prevention and Healthy Aging (POF4-354) / 351
- Brain Function (POF4-351) / 352 - Disease Mechanisms
(POF4-352)},
pid = {G:(DE-HGF)POF4-354 / G:(DE-HGF)POF4-351 /
G:(DE-HGF)POF4-352},
experiment = {EXP:(DE-2719)PRECISE-20190321},
typ = {PUB:(DE-HGF)7},
pubmed = {pmid:41629717},
doi = {10.1007/978-1-0716-5154-4_12},
url = {https://pub.dzne.de/record/285026},
}