Software

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2024-07-24
15:46
[DZNE-2024-00918] Software
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Software: Python scripts related a publication 'Centrosomal Microtubule Nucleation Regulates Radial Migration of Projection Neurons Independently of Polarization in the Developing Brain' (v1.1)
Zenodo () [10.5281/ZENODO.7989834]
Python scripts related to a publication 'Centrosomal Microtubule Nucleation Regulates Radial Migration of Projection Neurons Independently of Polarization in the Developing Brain'..

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2024-07-24
15:28
[DZNE-2024-00917] Software
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Software: Microtubule retrograde flow retains neuronal polarization in a fluctuating state (v2)
Zenodo () [10.5281/ZENODO.7120626]
In developing vertebrate neurons, a neurite is formed by more than a hundred microtubules. While individual microtubules are dynamic, the microtubule array has been regarded as stationary. [...]

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2024-07-24
15:14
[DZNE-2024-00915] Software
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Model: VINNA for Neonates - Orientation Independence through Latent Augmentations
Training checkpoints for VINNA4neonates (https://github.com/Deep-MI/VINNA4neonates) - please cite the paper when using this resource (https://arxiv.org/abs/2311.17546)..

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2024-07-24
14:49
[DZNE-2024-00912] Software
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Software: MEmilio v1.2.0 - A high performance Modular EpideMIcs simuLatIOn software
Zenodo () [10.5281/ZENODO.11520409]
MEmilio implements various models for infectious disease dynamics, from simple compartmental (ODE) models through Integro-Differential equation-based (IDE) models (sometimes also denoted 'age of infection models') to agent- or individual-based models (ABMs). Its modular design allows the combination of different models with different mobility patterns. [...]

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2024-07-24
14:47
[DZNE-2024-00911] Software
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Model: DrugDiff - small molecule diffusion model with flexible guidance towards molecular properties (v1)
Zenodo () [10.5281/ZENODO.12755763]
DrugDIFF is a latent diffusion model that uses predictor guidance to generate small molecules with desired molecular properties..

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2024-07-22
09:51
[DZNE-2024-00901] Software
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Software: hCoCena: A comprehensive toolbox for network-based co-expression analysis and horizontal integration of transcriptomic datasets (v1.1.1)
Zenodo () [10.5281/ZENODO.10475493]
hCoCena is an R-package that allows you to integrate and jointly analyse multiple transcriptomic datasets or simply analyse a single dataset. hCoCena uses network representations of the data as the basis for integration overcoming technology-specific variances. [...]

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2024-07-22
09:48
[DZNE-2024-00900] Software
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Software: hCoCena - Horizontal integration and analysis of transcriptomics datasets (v1.0.0)
Zenodo () [10.5281/ZENODO.6911782]
hCoCena is an R-package that allows you to integrate and jointly analyse multiple transcriptomic datasets or simply analyse a single dataset if you don't want to do any data integration! hCoCena uses network representations of the data as the basis for integration. You can find more details in the wiki our GitHub repo ( MarieOestreich/hCoCena (github.com) )..

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2024-06-04
15:49
[DZNE-2024-00735] Software
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Software: Bison 0.4.0
GitHub ()
Bison, "Bisulfite alignment on nodes of a cluster," a bisulfite-converted short-read aligner that can natively utilize high-performance computing clusters to increase speed. The software is intended for users with bisulfite-sequencing data (either whole-genome or RRBS) who also have access to a computer cluster. [...]
External link: Download fulltextFulltext

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2024-04-02
13:49
[DZNE-2024-00330] Software
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Software: MEmilio v1.1.0 - A high performance Modular EpideMIcs simuLatIOn software
Zenodo () [10.5281/ZENODO.10796356]
MEmilio implements various models for infectious disease dynamics, from simple compartmental (ODE) models through Integro-Differential equation-based (IDE) models (sometimes also denoted 'age of infection models') to agent- or individual-based models (ABMs). Its modular design allows the combination of different models with different mobility patterns. [...]
Fulltext: Download fulltextZIP;

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2024-04-02
13:43
[DZNE-2024-00328] Software
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Software: mrphysics-bonn/AxonDiameter: MRM v1.2
Zenodo () [10.5281/ZENODO.10797780]
Is supplement to: Software: https://github.com/mrphysics-bonn/AxonDiameter/tree/mrm_v1.2 (URL)
Fulltext: Download fulltextZIP;

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