Software

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2025-07-08
14:38
[DZNE-2025-00833] Software
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Software: Spectral Analysis Code and Example for Vogt et al. 2024
Zenodo () [10.5281/ZENODO.14605144]
This repository contains code to model functional activity of opsins based on the spectral density template developed by Govardovskii et al. (2000). [...]

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2025-07-08
11:47
[DZNE-2025-00801] Software
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Software: Network state changes in sensory thalamus represent learned outcomes
G-Node () [10.12751/G-NODE.1RFZBN]
Code for generation of figures of Hasegawa, Huang, Paricio-Montesinos, Gründemann, 2024. Network state changes in sensory thalamus represent learned outcome. [...]

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2025-03-21
09:09
[DZNE-2025-00446] Software
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Software: Deep-MI/FastSurfer: v2.4.2
Zenodo () [10.5281/ZENODO.14894486]
FastSurfer v2.4.2 Changes affect only longitudinal processing of a single time point case inside docker: Our docker images were missing the script make_upright which is needed for the processing of a single time point case in the longitudinal stream. This is now added [...]
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2025-02-26
16:54
[DZNE-2025-00382] Software
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Model: DrugDiff - small molecule diffusion model with flexible guidance towards molecular properties (v2)
Zenodo () [10.5281/ZENODO.14772460]
DrugDIFF is a latent diffusion model that uses predictor guidance to generate small molecules with desired molecular properties..

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2025-01-20
14:16
[DZNE-2025-00180] Software
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Software: MEmilio v1.3.0 - A high performance Modular EpideMIcs simuLatIOn software
Zenodo () [10.5281/ZENODO.14237545]
MEmilio implements various models for infectious disease dynamics, from simple compartmental (ODE) models through Integro-Differential equation-based (IDE) models (sometimes also denoted 'age of infection models') to agent- or individual-based models (ABMs). Its modular design allows the combination of different models with different mobility patterns. [...]
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2025-01-20
14:10
[DZNE-2025-00177] Software
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Software: JEMRIS/jemris: JEMRIS 2.9.2
Zenodo () [10.5281/ZENODO.14591606]
jemris (2.9-2) stable; urgency=low Major support of sundials library 6.4 (no backward compatibility with older versions) Minor improved test metrics for unit tests (sanityck) Minor bug fixes Minor updated documentation
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2025-01-20
14:09
[DZNE-2025-00176] Software
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Software: lorenzobonaguro/cyCONDOR: v021
Zenodo () [10.5281/ZENODO.14620236]
cyCONDOR 0.2.1 changelog Included help function to assign metaclusters (Thanks to Lucas Secchim Ribeiro) Removal of redundant color_palette parameter and other redundant lines in the source code Added turkey hsd as post-hoc test to frequency_anova_test (see issue #10) Modified emmeans test in frequency_anova_test (see issue #10) Improvement of error messages
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2024-11-19
10:37
[DZNE-2024-01353] Software

Software: mrphysics-bonn/spiral3dream: MRM paper release, v1
Zenodo () [10.5281/ZENODO.8319271]
3DREAM sequence with spiral gradients in the imaging train

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2024-11-19
10:35
[DZNE-2024-01352] Software

Software: mrphysics-bonn/spiral3dream: MRM release, v2
Zenodo () [10.5281/ZENODO.8422024]
Includes sequence source code

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2024-11-19
10:35
[DZNE-2024-01351] Software
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Software: mrphysics-bonn/spiral3dream: MRM release, v3
Zenodo () [10.5281/ZENODO.13304406]
Includes sequence source code and image data

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