Software

DZNE-2025-00446

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Software: Deep-MI/FastSurfer: v2.4.2

Reuter, M.DZNE* ; Kügler, D.DZNE* ; LeHenschel ; Abdelrahman, A.DZNE* ; Girodi, A.DZNE* ; VellaRo ; Estrada Leon, E. S.DZNE* ; Abdullah, T.DZNE* ; Osama Ali ; Pollak, C.DZNE* ; Shirvani, N.DZNE* ; Diers, K.DZNE* ; jrussell9000 ; John Kruper ; Parham Moonesi ; Tashrif Billah ; pcamach2 ; sohn

2025
Zenodo

This record in other databases:  

Please use a persistent id in citations: doi:10.5281/ZENODO.14894486

Abstract: FastSurfer v2.4.2 Changes affect only longitudinal processing of a single time point case inside docker: Our docker images were missing the script make_upright which is needed for the processing of a single time point case in the longitudinal stream. This is now added. Background: Single time point cases can be used in a longitudinal study. For example, linear mixed effects models make use of this data to estimate cross-subject variance. In order to include single time point cases in a longitudinal analysis, they need to be processed through the same steps as other cases, to be comparable. The longitudinal pipeline permits doing so. What's Changed LONG: add make_upright to docker by @m-reuter in https://github.com/Deep-MI/FastSurfer/pull/664 Full Changelog: https://github.com/Deep-MI/FastSurfer/compare/v2.4.1...v2.4.2

Note: Apache License 2.0 [https://www.apache.org/licenses/LICENSE-2.0]

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Contributing Institute(s):

1. Artificial Intelligence in Medicine (AG Reuter)

Research Program(s):

1. 354 - Disease Prevention and Healthy Aging (POF4-354) (POF4-354)

Appears in the scientific report 2025

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Linked articles:

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Journal Article Pollak, C. (First author)DZNE* ; Kügler, D.DZNE* ; Bauer, T.Extern* ; Rüber, T. ; Reuter, M. (Last author)DZNE*
FastSurfer-LIT: Lesion inpainting tool for whole-brain MRI segmentation with tumors, cavities, and abnormalities.
Imaging neuroscience 3, imag_a_00446 (2025) [10.1162/imag_a_00446]2025   Files  Fulltext by Pubmed Central BibTeX | EndNote: XML, Text | RIS

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