Software

DZNE-2025-00833

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Software: Spectral Analysis Code and Example for Vogt et al. 2024

Parthier, D. ; Rost, B.DZNE* ; Vogt, A.

2025
Zenodo

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Please use a persistent id in citations: doi:10.5281/ZENODO.14605144

Abstract: This repository contains code to model functional activity of opsins based on the spectral density template developed by Govardovskii et al. (2000). The code estimates spectral density in a Bayesian framework and incorporates hierarchical experimental structure using Stan (Carpenter et al. 2017; Stan Development Team 2023) via cmdstanr (Gabry and Češnovar 2022).

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Contributing Institute(s):

1. Network Dysfunction (AG Schmitz)

Research Program(s):

1. 351 - Brain Function (POF4-351) (POF4-351)

Appears in the scientific report 2025

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Linked articles:

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Journal Article Vogt, A. ; Paulat, R. ; Parthier, D. ; Just, V. ; Szczepek, M. ; Scheerer, P. ; Xu, Q. ; Möglich, A. ; Schmitz, D.DZNE* ; Rost, B. R.DZNE* ; Wenger, N.
Simultaneous spectral illumination of microplates for high-throughput optogenetics and photobiology.
(0018-4888) 405(11-12), 751 - 763 (2024) [10.1515/hsz-2023-0205]2024   Files BibTeX | EndNote: XML, Text | RIS

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