Dataset

DZNE-2025-00225

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Dataset: Supplemental Material for Vitale et al., 2024

Vitale, D. ; Koretsky, M. J. ; Kuznetsov, N. ; Hong, S. ; Martin, J. ; James, M. ; Makarious, M. B. ; Leonard, H. ; Iwaki, H. ; Faghri, F. ; Blauwendraat, C. ; Singleton, A. B. ; Song, Y. ; Levine, K. ; Sreelatha, A. A. K. ; Fang, Z.-H.DZNE* ; Nalls, M.

2024
GSA Journals

This record in other databases:

Please use a persistent id in citations: doi:10.25387/G3.27625701.V1  doi:10.25387/g3.27625701.v1

Abstract: nba_v1.zip, neurochip_v1.zip, and and wgs_v1.zip are all pre-trained models specific to the NeuroBooster Array, NeuroChip Array, and 1000 Genomes WGS, respectively. The models are serialized in Pickle format and accompanied by a file with overlapping SNPs between each sequencing/genotyping platform and the reference panel. 1kg_30x_hgdp_ashk_ref_panel.zip contains the reference panel used for ancestry model training in GenoTools in Plink bed/bim/fam format. It is accompanied by a '..._labels.txt' file that lists each sample in the dataset and its respective ancestry label for the training/testing pipeline.

Keyword(s): Neurogenetics

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Contributing Institute(s):

1. Genome Biology of Neurodegenerative Diseases (AG Heutink)

Research Program(s):

1. 354 - Disease Prevention and Healthy Aging (POF4-354) (POF4-354)

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Linked articles:

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Journal Article Vitale, D. ; Koretsky, M. J. ; Kuznetsov, N. ; Hong, S. ; Martin, J. ; James, M. ; Makarious, M. B. ; Leonard, H. ; Iwaki, H. ; Faghri, F. ; Blauwendraat, C. ; Singleton, A. B. ; Song, Y. ; Levine, K. ; Kumar-Sreelatha, A. A. ; Fang, Z.-H.DZNE* ; Nalls, M.
GenoTools: an open-source Python package for efficient genotype data quality control and analysis.
G3: Genes, genomes, genetics 15(1), jkae268 (2025) [10.1093/g3journal/jkae268]2025   Files  Fulltext by Pubmed Central BibTeX | EndNote: XML, Text | RIS

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